rs36722988 SNP Detail

Summary

• ID
  rs36722988
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:122360518 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAAGAAAT GTTCCTCTTT
  CCTTGCCCCT GGGTGCAGCC ACGCTGAAGA ATAGGAAACA GCACACTGCG ATGAAGCAAG
  CACAGAGGAC ATGGGGCACT AGAGAAGCCA CTCCACGACT GACTAGGGAG CTGCTGTTTC
  TGAGCTCTGC TCTTAGGAAA CTGTAAGTTG TCACCTGGTG CCTCCTGACT GCAACATGGC
  R
  CATCTAACAT TAATCTCCTT AAGTTCTGAC CACTCTGTCA AGATCTACCT CATGGGCTAC
  TCTCTTTTGC CCTCCTTTTA AATGTCACTG TTCATCCTGG GAGTAGTGAC TTCTTCTAAC
  TTCTTCCTTC AATTGTTTCA CGTTCCTCAT TTCCCATTTG TTAGAGCTCC CTTTAACTAT
  TTCGGACACA TTAGGTTTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51614450	NES14662917	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36722988					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51614450	NES14662917	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122360518 () rs orientation: forward

Symbol	Name	Function Class
Fnbp1l	formin binding protein 1-like	within coordinates
Gm43569	predicted gene 43569	within coordinates
Rr74164	regulatory region 74164	1564 bp proximal
Rr78947	regulatory region 78947	within coordinates
Rr375679	regulatory region 375679	727 bp downstream
Tssr31506	transcription start site region 31506	130 bp downstream
Tssr35455	transcription start site region 35455	1916 bp downstream