rs36724199 SNP Detail

Summary

• ID
  rs36724199
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:30170940 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGAAAACTC ACTATTTGCT
  GACTCTGGAG CTCTAGCTCA CCTCCCAAAA GGCCATTTCA TCTTGGTAAG ATGGACACTC
  CCTGGCCTGT GGCCTCAGTT TCCCCCACTA TAAATCTCTG AACTTAGAGG AGTCAAGCGG
  GGGTGGACAG CTATAGTTAC TGGTGTGTTC TATGTGGCTC AGAGTGTTTC TCAGAATCAC
  Y
  AAGGAGTCCC CTGAAATGGA GCTTTGTGGC CCACGAGGAA ACCTACAGTT TAATATGAAC
  CTGGGGAATG TGAGGCTGGG AAGGAGAAGC TATTTAGAGT TGTGCTTGGA AACAGCTTTC
  TCTAAAGATG CAGGATATTT TGGAAACAGT ATTCTAAAAT CTTTTTCCCC CCCCCATTTC
  AATGGAACAG AGGAGTAGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	PWD/PhJ
ss51574686	NES14856878	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	PWD/PhJ
rs36724199					SNP	T	T	T	T	T	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51574686	NES14856878	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:30170940 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17248	CpG island 17248	1975 bp proximal
Mir96	microRNA 96	1390 bp upstream
Mir183	microRNA 183	1204 bp upstream
Mirc35	microRNA cluster 35, including Mir182 through Mir183	1204 bp distal
Mirc35hg	microRNA cluster 35, host gene	within coordinates
Mirc40	micro RNA cluster 40, including Mir96 through Mir183	1204 bp distal
Rncr4	retina expressed non-coding RNA 4	1952 bp upstream
Rr146072	regulatory region 146072	539 bp distal
Rr146073	regulatory region 146073	460 bp proximal
Rr146074	regulatory region 146074	1260 bp proximal
Tssr55327	transcription start site region 55327	1919 bp upstream