rs36724420 SNP Detail

Summary

• ID
  rs36724420
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:12655702 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAAACAAAC AAACAAACAA
  ACCCACCCCT GGGGGTGAAC CTGCTGGCAA GGTCTCTCCC TTATTAGTAC CAAATCACTG
  GGATCTCAGA TAAGTAAGTC ACCTAGGAGA TCCCCGGGCT GCCAACCCCT CCAGGACTCC
  CCTCTATGTA TCCCTCCCCG GGGAGGTTCA CGAATGGCGG TCGGAATCTA CTGTCCGCGA
  Y
  TGAACCTGAG GAAAAAAAGC CCAGACAAGC GTGGCCAGAG TGATTAAAAA GGAAGTGATC
  CCATACCGGA AGCCTGGGAC CCGCCGAGCA TGGCTTGCGG GAGGGGAGAG GGTGGGGCCC
  GTGCTTGTGA ACCCGGATCG GTGGTAACCA CAGGACCCGA CTCCATTATT TTGGTGAGAA
  AATGTGAGCC GAGCTGGTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51469132	NES13985210	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36724420					SNP	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51469132	NES13985210	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:12655702 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18322	CpG island 18322	within coordinates
Gm57203	predicted gene, 57203	within coordinates
Rps5	ribosomal protein S5	521 bp upstream
Rr368230	regulatory region 368230	290 bp upstream
Rr642402	regulatory region 642402	within coordinates
Rr642403	regulatory region 642403	316 bp proximal
Rr642404	regulatory region 642404	601 bp proximal
Tssr64485	transcription start site region 64485	540 bp upstream
Tssr64486	transcription start site region 64486	1179 bp upstream
Tssr70626	transcription start site region 70626	295 bp downstream