rs36724559 SNP Detail

Summary

• ID
  rs36724559
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:88529582 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCCTCTTC AAGGCTCTGG
  GGACAGGGTG TGATCACAAC CAAGTCCTGG CCCTCAGCAT ACTTTCAGCA TAACAAGAGA
  GGATGTGGAT TTCCAGCTGA ATAGAGCCAG GCATCATCAG GTGGTGCCAT GAACTCGGGA
  GAAGCAGGAC ACGGTGGAGG AGGTCCCACG CCACACAAGT GACAAGGTGA CATGACAGCT
  R
  AGCAGACAGA GACAACAATC AGGGCAGGAT CTGAGGAGGA GCATTCCAGA CAGGGGACCA
  TACGTATCCT CTTGCCAAAA CACAAGCATG CCAATGTGGA GACATTTTCT GAGACAGCAG
  TGTGGCGCTT CCTCTACCCA GGTGCTCCAG GAAAGGAAGT AGCACTGACA GAAAAGCTGC
  AGGGGGCTCA CAAGCCAGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50598761	NES14052498	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36724559					SNP	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50598761	NES14052498	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:88529582 () rs orientation: forward

Symbol	Name	Function Class
Tssr82324	transcription start site region 82324	1436 bp downstream
Tssr82325	transcription start site region 82325	1457 bp downstream
Zfp423	zinc finger protein 423	within coordinates