rs3672460 SNP Detail

Summary

• ID
  rs3672460
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:100308551 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGTGTATAC ATTTACTTAG
  AGGATCTAAT AAGTAAAGAC CAGCCGAGGC CCAGGATGAC TCTGAACGTG ACCCCCTCTC
  TCTTACTTCC CAGCCCAAGT GCTAGGATCG CAGCCACCAC ACCTGGTTTC CTGTAGCACT
  GAGGATAAGC CCAGGGCATC ATGCACGCTG GGCAAGCACT GTGTAACTAT GTTACGTCCC
  Y
  AGCCCAATGA ATTAATTTTC CACAGGTGGT CCGTGCACAT GGTCGGAAAT GGACAGACAA
  GCAGACTGTG GTATAAGCCT GTTACCCTGT CACCCGCTGG AGGTAAGGAA AGAGGAGGGA
  GTCGGCAGGG TCAGCCTGGG CTAGGGCTAT ACCTAGACCC TATCTCAAAG GAAAGAAAAA
  GAAGTTCAAA AGCCTCCAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss5048433	WI_WGS_15_101357479	WI	MOUSE	f	SNP	C			T
ss148475174	ENSMUSSNP5260164	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs3672460					SNP	C	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:100308551 () rs orientation: forward

Symbol	Name	Function Class
Rr509705	regulatory region 509705	within coordinates
Slc11a2	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2	Intron
Tssr136419	transcription start site region 136419	503 bp upstream