rs36725003 SNP Detail

Summary

• ID
  rs36725003
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135251768 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCTCTAGATT TGTACATGGC TGGTGCCTGC TGGCTCCTCT
  GTGCACCCAG AGAAGGTTGG CTACAGATGT CCCTGCAGAG GAGGGAACCC GGGAAGGTTA
  Y
  AAGGTTACAA TCCTCTTCCC AAGAGCCTCT GGGCCTTGGA AACTGAGAGC CCTTTGAGTT
  TCCTCCTCCC TGAAGATCCC ACCTCTTCCT CACACACCTT                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51380640	NES14469647	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	C	C	C	C	T	T	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36725003					SNP	C	C	C	T	C	C	C	C	C	T	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51380640	NES14469647	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135251768 () rs orientation: forward

Symbol	Name	Function Class
Gm41956	predicted gene, 41956	within coordinates
Lmod1	leiomodin 1 (smooth muscle)	783 bp upstream
Rr12584	regulatory region 12584	633 bp proximal
Rr28593	regulatory region 28593	432 bp proximal
Tssr8958	transcription start site region 8958	740 bp upstream
Tssr8959	transcription start site region 8959	792 bp upstream