rs36725095 SNP Detail

Summary

• ID
  rs36725095
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:178234177 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATGGAGGA CTGGAGCTGC
  GACTAGAACC TGGCGGGATC CTCTGCGGCT GTGCCGAAAC CCCGCCCAGC CCGGCCCAAC
  CCGGCCCCAG CCGCCTCCAT TTTGCCTCCT CCTCCGCCAG GCGGAGCGCA GCCTCCAGGT
  CAGACTGGGC CCTAGCGGCC CGGGTCGCGC TAGAGCCTTG CATAAGGAAC ACGCACTTTA
  R
  TCACTTTAAA GAAAACCCAG CCGGGACTTG TCGGGCCGCC CAGACCGGCC GGGTACCCGA
  GAGGCCTCAG GGGACCCGAA AAACTAATGT TTCATGTTGA ACTGCAAGAC CTTTTGAATT
  GTTGCTAACC CAGCCGAATG ACTTAAAATC GGATCTGTGA CTCAACAGCC ATTACGTGAT
  AAATTGACAA CATCACCGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51413004	NES14449899	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36725095					SNP	A	A	A	A	A	G	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51413004	NES14449899	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:178234177 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1092	CpG island 1092	within coordinates
Efcab2	EF-hand calcium binding domain 2	within coordinates
Gm70920	predicted gene, 70920	184 bp upstream
Gm70923	predicted gene, 70923	within coordinates
Rr29069	regulatory region 29069	within coordinates
Rr372517	regulatory region 372517	within coordinates
Tssr10392	transcription start site region 10392	592 bp downstream
Tssr10393	transcription start site region 10393	578 bp downstream
Tssr10394	transcription start site region 10394	567 bp downstream
Tssr10395	transcription start site region 10395	542 bp downstream
Tssr10396	transcription start site region 10396	507 bp downstream
Tssr10397	transcription start site region 10397	52 bp downstream
Tssr15493	transcription start site region 15493	173 bp upstream