rs36726228 SNP Detail

Summary

• ID
  rs36726228
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:4840712 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAAGGAGA CAGCCCACTC
  AAGAGCCCAG AAATTTGTGA CAGTCAAGTT CTACAAAACT AGCACAGTGA GATTCCGACC
  CTGCCCAGAA AGGCTCAGAG TGTAACAGCT TGTCTCAGCA GTTGGCTCAC AGGCCATGGC
  AAGGGAGGTT GGGGGCGAGG ACAATGACAC AAATGTACAA ATGACAAGCA GTGAGGAACC
  R
  CCATTAGAAT CACTTATGTC CTTGAACATT CTAACCAGTG TGACACTAGA ACTAAGGTCT
  CCACCACTGC CATGGGTCAT AGCTCACTGG ACAGGCTGGG CTGGCTGGGC TGGCTGGGTT
  GAAGCTTCAA TCTGCATTCT GAATGGGGGC TTGGAAGATG CAGAAAACCC TATAAACAGA
  TGCAAAGAGC TGACTGGGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss50908930	NES13484799	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs36726228					SNP	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50908930	NES13484799	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:4840712 () rs orientation: forward

Symbol	Name	Function Class
Gm6123	predicted gene 6123	642 bp upstream
Rr407421	regulatory region 407421	1819 bp distal
Rr407422	regulatory region 407422	1926 bp distal
Rr407423	regulatory region 407423	159 bp distal
Rr407424	regulatory region 407424	413 bp distal
Tssr5799	transcription start site region 5799	605 bp upstream