rs36729080 SNP Detail

Summary

• ID
  rs36729080
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:85808577 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTGTGAAC TGCTCTACTA
  TGCTCTGTCC CTCCTCCTTC CCCCTTATCG CCAAGTGGAC AACTTGCCAA AAGGCCAACC
  TGACTGGCAG GAGGAGCAGG GCTTTGGGCA TAACAGTGCT TGCCTTTGGG TACATGACTT
  CCTTCCTTGA TTTCCTGAAA GAAATGTAGA TGAGGAATTA GTGTGCCTTG GAGGTTCAAG
  W
  CCCTGGAGGT GTCCATGCAC ACCCGAAGGG AACAAGAATT GGTTTAGTCT GACCCAACTA
  GGAGTGACCA TGGCCCGAGG ACACAGATCC AGGCTGCCTT GAACAATATG TTCCCTGTGA
  AGAGTTTATA TGAGCATTCA GTCATAGAAC AAGACTGCCA TAAATCAATG TAGTTACTGA
  ATTCACTGAT GGGGACATCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51034537	NES14384632	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36729080					SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51034537	NES14384632	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:85808577 () rs orientation: forward

Symbol	Name	Function Class
Flvcr2	feline leukemia virus subgroup C cellular receptor 2	within coordinates
Rr261858	regulatory region 261858	1577 bp distal
Rr261859	regulatory region 261859	577 bp distal
Rr261860	regulatory region 261860	within coordinates
Rr261861	regulatory region 261861	1024 bp proximal
Rr264621	regulatory region 264621	907 bp distal