rs36729281 SNP Detail

Summary

• ID
  rs36729281
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:128072523 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAAATATG TACAGCAGCC
  CCAGGAGGGA GGTGCAGCTA GTGTGCGCAG CTTCGGGCAG CCAAGCTAAA GCAACCGCAG
  TGTCCCCAAC ATCCAGCACA CAGAGCATCT GAGATGCTGG TTTTCACCCT AGGCAGTCAG
  TCCCCTCTCC CACTTTGTCA TCACCACTGG GAAGTGGGGA CAGCACAGGC TTAGCCAAGT
  Y
  CTGCACTGCG ATCTGCAAGT GACCCTCCCT ATTACTTGCT ATTGGAGTGC CTCCATTTCT
  TTCTCTGAAG AAATCCAAGT CACACCATGA TGGTCGGGGG GGGGGGGGGG TAATAAAATG
  AGTGTGCCTG AAAGCTCCTG GCACAAAACA TGGCTCCATG AACCTTCTGT CTCTTTCTTC
  CCCCAAGGTA GAGGACAATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51863754	NES14893027	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36729281					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51863754	NES14893027	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:128072523 () rs orientation: forward

Symbol	Name	Function Class
Gm55163	predicted gene, 55163	534 bp upstream
Rr639181	regulatory region 639181	129 bp distal
Rr639182	regulatory region 639182	149 bp distal
Tspan9	tetraspanin 9	within coordinates