rs36730578 SNP Detail

Summary

• ID
  rs36730578
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:11350232 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TACTT ACAGGTCTTG GATCCCTGGC
  Y
  TTGTCCAACC ATAGCAAGAG CAAGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss50595994	NES13637773	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	T	T	C	T	T	C		C	T	T		C
ss325721056	CHEV_19_11447358	CHEVERUD	SCREENING_POP	f	SNP											C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs36730578					SNP	T	T	C	T	T	T	C	T	T	C	C	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50595994	NES13637773	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:11350232 () rs orientation: forward

Symbol	Name	Function Class
Ms4ac	membrane-spanning 4-domains, subfamily A cluster	within coordinates
Rr544325	regulatory region 544325	1415 bp distal
Tssr155162	transcription start site region 155162	328 bp downstream
Tssr155163	transcription start site region 155163	312 bp downstream
Tssr155164	transcription start site region 155164	281 bp downstream
Tssr155165	transcription start site region 155165	196 bp downstream
Tssr155166	transcription start site region 155166	155 bp downstream
Tssr158339	transcription start site region 158339	607 bp upstream
Tssr158340	transcription start site region 158340	495 bp upstream
Tssr158341	transcription start site region 158341	478 bp upstream
Tssr158342	transcription start site region 158342	57 bp downstream