rs36731343 SNP Detail

Summary

• ID
  rs36731343
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:66592745 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTGTTGAG GGTCGCTCCC
  ACCCCTTTGT TTTTTATAAA TCATGATCTA AGGTGGCAGG CACCTGCTAA GGAATTGTAA
  GACTCTTGTC CGGAAATAAC TTTGCAGGGC ATACTCGGTT ATTGTTTTTA TAAGGCCAGC
  GGGCAATGCC TAAATGGTAC CTTGCCGGTG TGAGGGTGGT GGTTCAGACC ATTATTTCTG
  R
  AAGGTCCAAC AAGAGCATGG CATTGCTAGA CAGATTTAAA GAGCAGCTGA GTGTCTCGAG
  GTCATAGTGA ATGTGTAGTT CCAATAAAAA TACGTTGCAG GGCGTACCTG TCCCTAACTC
  CAGCGCTCAG GACGTTGAGG CAGTCGAATT AGCCAGGACT GGTATAGTTT AAGGCCGATC
  TCTGTCACAT AGTGAGACCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NZW/LacJ	WSB/EiJ
ss50450318	NES13440780	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NZW/LacJ	WSB/EiJ
rs36731343					SNP	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50450318	NES13440780	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:66592745 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10160	CpG island 10160	285 bp distal
Cpgi10161	CpG island 10161	1180 bp proximal
Pmaip1	phorbol-12-myristate-13-acetate-induced protein 1	within coordinates
Rr405709	regulatory region 405709	954 bp downstream
Rr539737	regulatory region 539737	1071 bp distal
Rr539738	regulatory region 539738	1262 bp distal
Rr539739	regulatory region 539739	1208 bp distal
Rr539740	regulatory region 539740	within coordinates
Tssr151705	transcription start site region 151705	1070 bp downstream