rs36733350 SNP Detail

Summary

• ID
  rs36733350
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:58009656 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGGGCTAG GCTATTAGCA
  GAAGGTAAAT AAAAGATCAG GTAATGTAGC AGGTTCTAAT ACACCTTTAC ACACTGCTCT
  TTGTCTCTGC CACTTCTGTG CCAGACAGTT ACACTGGTCC TCTGTGTTGG TTACCTTCAG
  GGACAAATGA GTTGTTTGGC AATATTGACG GATCACTGTA GAATGTAGGT ACTCAAACCT
  W
  CATGGCTTAC ACCACAATTT ACACCATAAG CATTTATACT GCTTAGCCTA CTTCTTCTAG
  GCAACAAAAA TGGCAACATT TTACTGCGGA AGCTTGAACA TCCATTCAAG AGACTTGACA
  CATCTCCCAC ATCCTCAAAC TCTGACTTCG TGGCCCTCGA CTCTTTCCAT CTCTTGAAAA
  GTTCCAGTCC AAACGCCCTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50405917	NES13432231	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36733350					SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50405917	NES13432231	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:58009656 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10080	CpG island 10080	1143 bp proximal
Rr393751	regulatory region 393751	864 bp upstream
Tssr5332	transcription start site region 5332	1707 bp upstream