rs3673409 SNP Detail

Summary

• ID
  rs3673409
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:101865943 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGTTCCATAT CTTTGGCATA AAAGGGGTAA ATGTGGACTT
  AAATGTCTGA TTGTTAGTGC TTTATTAATA AGCATACCCC CAGATTTCTC ATCCCCTAGT
  Y
  CACAGATCTC CAATAAAAAT CTAACTTGTA AACACGTTCA TGAAGAGCAT GGCTTCACTG
  CTGTCTGGTG CCTTCTCGTG TGACACCAAA TATTTCTGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J
ss5049386	WI_WGS_9_102722310	WI	MOUSE	f	SNP			C	T
ss46409492	mCV23562219	ABI	CRAMUS_MOUSE	f	SNP	C	C		T
ss136869345	ENSMUSSNP203079	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J
rs3673409					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:101865943 () rs orientation: forward

Symbol	Name	Function Class
Ephb1	Eph receptor B1	within coordinates
Gm31326	predicted gene, 31326	516 bp upstream
Gm69124	predicted gene, 69124	417 bp upstream
Rr198441	regulatory region 198441	1943 bp distal
Rr198442	regulatory region 198442	143 bp distal
Tssr86718	transcription start site region 86718	449 bp upstream