rs36735301 SNP Detail

Summary

• ID
  rs36735301
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:72344634 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACCCGGAGT TTGGGAACCA
  GCACCCACAT GACAGCTCCA GTAACCTACC TCCAGGAATT TCTAACTCCA GTTCTAGGGG
  AGCTGATAAC ATCTTCTGGT CTTTGTGGGC ATCAGGCACA TAATGGCGCA TAGACACTTT
  ATTTACGTAA AGTTAAATCT CAAAAAGTTC TTAAGAAAAA AAGATAAAGT ATGATTGTGA
  R
  AACACGTAGA GTCTTTAACA ATGTTGATTT CACAGAAACT GTAAGCAGAT TGGTGATGAC
  AGGGGCTAGG GCAGGGGGAA ATGGCGAAGG GCTAGACTGC AGTTAGCAAA ATATAGTCAG
  AAGTACAGGG GTGCACAGCC AGGTGGGGGT GTAGGATGGT AATATGCTGT ACATTACAAA
  AAAAAACCAC ACAGAGGAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50742796	NES14240584	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A	G	A	A	A	G		A	A	G	A
ss136620979	ENSMUSSNP5608269	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A						A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36735301					SNP	A	A	A	A	A	A	A	G	A	A	A	G	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50742796	NES14240584	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:72344634 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22015	CpG island 22015	666 bp proximal
Mns1	meiosis-specific nuclear structural protein 1	642 bp upstream
Rr401506	regulatory region 401506	1026 bp upstream
Rr682742	regulatory region 682742	693 bp proximal
Rr682743	regulatory region 682743	1194 bp proximal
Tssr85997	transcription start site region 85997	633 bp upstream
Tssr85998	transcription start site region 85998	1167 bp upstream
Tssr85999	transcription start site region 85999	1182 bp upstream
Tssr86000	transcription start site region 86000	1227 bp upstream
Tssr86001	transcription start site region 86001	1257 bp upstream
Tssr86002	transcription start site region 86002	1491 bp upstream