rs36735576 SNP Detail

Summary

• ID
  rs36735576
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:10584866 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAAGCACAT CCTGTTAGCT
  TAACAGTTTC ATTACTATTA GAACAATTGT AATTCAACTG TATCCAAAAC AAAAAAACCC
  CAAAAAACCA TGAATGTTTT TGAGGACTGT TAGTAAAGAT CTATTGTAGC TTTGCTTGTT
  ATTACTACAG ATTACTTTCT CTCCACATAC ATAGGTGAAG GAGAAACATT TCATTCTCTT
  Y
  TCAAATCTTG AATAGAATGA GGTGAATTAT AGAGGACTTT GCTTGTAGAG CAGAGAGAAA
  GAGAGCTGAA ATTGCAAGGC CTAGATGCTT ACCAGCCTCA GTCCTGGCCT TTTGTACATC
  CCCTTAGGGT CTTGTGCGAG CTTAGTACAT GTTACAGGCT CGCTTAGTAT TTCCTCTGTG
  TGGCGAGTAG AACTTGGAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50601248	NES13642987	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36735576					SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50601248	NES13642987	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:10584866 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10615	CpG island 10615	1449 bp distal
Ddb1	damage specific DNA binding protein 1	within coordinates
Gm59162	predicted gene, 59162	within coordinates
Rr362968	regulatory region 362968	265 bp distal
Rr405857	regulatory region 405857	1846 bp downstream
Tkfc	triokinase, FMN cyclase	1848 bp upstream
Tssr155068	transcription start site region 155068	1948 bp downstream
Tssr155069	transcription start site region 155069	1888 bp downstream
Tssr155070	transcription start site region 155070	1858 bp downstream
Tssr155071	transcription start site region 155071	1807 bp downstream
Tssr155072	transcription start site region 155072	1554 bp downstream
Tssr155073	transcription start site region 155073	1214 bp downstream
Tssr155074	transcription start site region 155074	290 bp upstream
Tssr155075	transcription start site region 155075	745 bp upstream
Tssr158207	transcription start site region 158207	1587 bp upstream