rs3673613 SNP Detail

Summary

• ID
  rs3673613
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:162693586 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTCACTGG CAGAATACTT
  GGCTGGCGTG TGCAAGGCCT TGTGGATAAT CCCACTGTGT TCTATAAAGC CATAAAACGT
  AGGCATTTCG AGCACAGATG AGAAATGTGA ATGGCCACAC AGAGGGACAG ACTTCAAATA
  ATTCCTATTC CACTTCTCTG CTACTGAATG GCTGAGCTAC CACTATGTTG ACAGCTTCAA
  Y
  GTAGGGACTA GGCAGTGCCG TGGGGCTGAG AGTCACTCAT TTGGGGACCT CCCAAATGGC
  CGCAGGGAGC TGAGCCCTCA TGTCTAGAGT CATACATGTG TGACTGCATG CAGGGAGGTC
  ATCAAACGAA TGACCATGTA AGATGCGGCG AGTGTTAAAA AGGAACAACT GAGTAAAATG
  TGTAACTGAT GAGCGACCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss5049590	WI_WGS_2_163778105	WI	MOUSE	f	SNP	C								T
ss16374310	02.164.715	TWGNF	TWGNF-Mouse-2	f	SNP	C	C	C	T	C	C	T	C	T	T	T	T	T	T	C	T	C	T	T	T	T	T	C	T	T	C	T	C	C	C	T	T	T	T	C	T	C	T	C	C	T	C	C	T	T	T	T
ss45223904	mCV23584498	ABI	CRAMUS_MOUSE	f	SNP	C	C	C						T										T
ss148198877	ENSMUSSNP7014202	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C																T
ss320602586	CHEV_2_162677402	CHEVERUD	SCREENING_POP	f	SNP																									T																	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs3673613					SNP	C	C	C	T	C	C	T	C	T	T	T	T	T	T	C	T	C	T	T	T	T	T	C	T	T	C	T	C	C	C	T	T	T	T	C	T	C	T	C	C	T	C	C	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:162693586 () rs orientation: forward

Symbol	Name	Function Class
Rr569228	regulatory region 569228	1802 bp proximal