rs36737213 SNP Detail

Summary

• ID
  rs36737213
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:49023436 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACACCAGA CATACACATA
  CATACTGTAC ATACCACACA CATACACCAT GCATGCCATA TACTTGAAAC ATACATACAT
  ACATACACAC ACACACACAC ACACACACAC ACACACCACA TACCACCACC ACCACCTCCA
  GGAGCCAACT GAGGCTAAAT TTTCAAAATC TGCTCCAGTT GAGTAACTCC TGGATATCTA
  R
  AGGTTTTGTC CTTTCTCAGA GAGCATCCTT TTATTCAGCA TTAACAAAGC ACACCCACTG
  AACAAAGCAC AGAATAGGCC GGGTATCATG CAGGTCTGAA ACCAGCTTTC TTGGTGCCAT
  GGTGGCTCTG TGGTCAGTTC TCCAAGCCTA TCACTCATTG ACCTGCCACA GCTGTGGCCA
  GCACCTGTGA GTTTCAGGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51658479	NES14824247	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36737213					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51658479	NES14824247	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:49023436 () rs orientation: forward

Symbol	Name	Function Class
D6Dcr8	DNA Segment, Chr 6, Derry C. Roopenian 8	52 bp distal
D6Mit142	DNA segment, Chr 6, Massachusetts Institute of Technology 142	64 bp distal
Gm56981	predicted gene, 56981	within coordinates
Gpnmb	glycoprotein (transmembrane) nmb	within coordinates
Tssr56319	transcription start site region 56319	1185 bp downstream
Tssr56320	transcription start site region 56320	1145 bp downstream
Tssr56321	transcription start site region 56321	1131 bp downstream
Tssr56322	transcription start site region 56322	1113 bp downstream
Tssr56323	transcription start site region 56323	1077 bp downstream
Tssr56324	transcription start site region 56324	1047 bp downstream
Tssr56325	transcription start site region 56325	891 bp downstream
Tssr56326	transcription start site region 56326	876 bp downstream
Tssr56327	transcription start site region 56327	822 bp downstream
Tssr56328	transcription start site region 56328	744 bp downstream
Tssr56329	transcription start site region 56329	668 bp downstream
Tssr56330	transcription start site region 56330	497 bp downstream
Tssr56331	transcription start site region 56331	452 bp downstream
Tssr56332	transcription start site region 56332	379 bp downstream
Tssr56333	transcription start site region 56333	341 bp downstream
Tssr56334	transcription start site region 56334	331 bp downstream
Tssr56335	transcription start site region 56335	311 bp downstream
Tssr56336	transcription start site region 56336	284 bp downstream
Tssr56337	transcription start site region 56337	261 bp downstream
Tssr56338	transcription start site region 56338	245 bp downstream
Tssr56339	transcription start site region 56339	231 bp downstream
Tssr56340	transcription start site region 56340	41 bp downstream
Tssr56341	transcription start site region 56341	208 bp upstream
Tssr56342	transcription start site region 56342	240 bp upstream
Tssr56343	transcription start site region 56343	790 bp upstream
Tssr56344	transcription start site region 56344	804 bp upstream
Tssr56345	transcription start site region 56345	822 bp upstream
Tssr56346	transcription start site region 56346	859 bp upstream
Tssr56347	transcription start site region 56347	897 bp upstream
Tssr56348	transcription start site region 56348	923 bp upstream
Tssr56349	transcription start site region 56349	1246 bp upstream
Tssr56350	transcription start site region 56350	1273 bp upstream
Tssr56351	transcription start site region 56351	1303 bp upstream
Tssr56352	transcription start site region 56352	1316 bp upstream
Tssr56353	transcription start site region 56353	1385 bp upstream
Tssr56354	transcription start site region 56354	1400 bp upstream
Tssr56355	transcription start site region 56355	1425 bp upstream
Tssr56356	transcription start site region 56356	1443 bp upstream
Tssr56357	transcription start site region 56357	1455 bp upstream
Tssr56358	transcription start site region 56358	1473 bp upstream
Tssr56359	transcription start site region 56359	1488 bp upstream
Tssr56360	transcription start site region 56360	1525 bp upstream
Tssr60846	transcription start site region 60846	1110 bp upstream
Tssr60847	transcription start site region 60847	1027 bp upstream
Tssr60848	transcription start site region 60848	94 bp upstream
Tssr60849	transcription start site region 60849	827 bp downstream
Tssr60850	transcription start site region 60850	882 bp downstream
Tssr60851	transcription start site region 60851	1352 bp downstream
Tssr60852	transcription start site region 60852	1395 bp downstream
Tssr60853	transcription start site region 60853	1405 bp downstream
Tssr60854	transcription start site region 60854	1424 bp downstream
Tssr60855	transcription start site region 60855	1457 bp downstream
Tssr60856	transcription start site region 60856	1495 bp downstream
Tssr60857	transcription start site region 60857	1524 bp downstream