rs3673841 SNP Detail

Summary

• ID
  rs3673841
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:138761282 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGAGC CCAGGCTTCT CGTTCACTCC
  Y
  GCCTGAAGCA CTCCCCACAG CTCAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss5049819	WI_WGS_1_139707179	WI	MOUSE	f	SNP						C	T
ss45084652	mCV23607269	ABI	CRAMUS_MOUSE	f	SNP							T		C
ss60805766	NES16482157	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	T	T	C		C	C	C	T	C	T	T	C	T
ss145582963	ENSMUSSNP6178894	ENSEMBL	ENSEMBL_Sanger	f	SNP									C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs3673841					SNP	T	C	T	T	T	C	T	C	C	C	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60805766	NES16482157	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:138761282 () rs orientation: forward

Symbol	Name	Function Class
Cpgi824	CpG island 824	1886 bp distal
Lhx9	LIM homeobox protein 9	Intron
Rr419772	regulatory region 419772	1870 bp proximal
Rr419773	regulatory region 419773	1980 bp proximal