rs3673900 SNP Detail

Summary

• ID
  rs3673900
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:52029918 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTGACTAA GAGCACAGGA
  AAGAGTGATC TTTCGTCCTC CTTTAGGTAG TATTAACTGT GCTCTGCAGT ACTGGTTTGG
  TGGTCACAAA ATGTGTTAGC TTGTGGCTGC TTTGAAGTGT TCTTGTTTCT CCATCAATTT
  TGAAAGATAG CTTCATTGTA GTTAGGAATT TTTGTAGACA CAAACTTTAC ATCAGAAGTA
  R
  ATGGAGGGAG GAGATCTCTA GGACATCCCA GAGACCTGGG ATGGGGGAAG CCCCCAGGAA
  TCTATGGGGG TGACTTTAGC TGAGAATCCA AGCAATGGGC ATATGGAACC TAAAGAAACT
  ACCTCCTGTA GACAGGGAGG ATATCCAGTG GAAGGATAAG AACACCAACC CACCCACAAA
  ACCTGTCATG TCTACAAGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	DBA/2J
ss5049880	WI_WGS_12_46422833	WI	MOUSE	f	SNP			A	G
ss137728943	ENSMUSSNP3619549	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A			G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	DBA/2J
rs3673900					SNP	G	A	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:52029918 () rs orientation: forward

Symbol	Name	Function Class
Gm60186	predicted gene, 60186	1701 bp downstream
Rr387211	regulatory region 387211	158 bp upstream