TGTGC TAGAGGCAGG TGAACCCTGA R AGGTGGGATG TAGAAGTGAT CTGCT R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
LG/J |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
SM/J |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss50677576 | NES14010809 | PERLEGEN | MM_PANEL2 | f | SNP | A | G | A | A | A | G | G | G | G | G | A | G | G | G | ||
ss322916252 | CHEV_9_40264672 | CHEVERUD | SCREENING_POP | f | SNP | A | A | ||||||||||||||
SNP Consensus Information | |||||||||||||||||||||
SNP | Consensus Type | A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
LG/J |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
SM/J |
WSB/EiJ |
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rs36739402 | SNP | A | G | A | A | A | G | G | G | G | A | G | A | G | G | A | G |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss50677576 | NES14010809 | PERLEGEN | MM_PANEL | f | SNP | A/G |
Location: Chr9:40368383 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi21594 | CpG island 21594 | 720 bp distal | ||||||
Gramd1b | GRAM domain containing 1B | Intron | ||||||
mRNA-UTR | ||||||||
Noncoding-Transcript-Variant | ||||||||
Rr676839 | regulatory region 676839 | 1662 bp distal | ||||||
Rr676840 | regulatory region 676840 | 833 bp distal | ||||||
Rr676841 | regulatory region 676841 | 1231 bp distal | ||||||
Rr676842 | regulatory region 676842 | 1594 bp proximal | ||||||
Rr676843 | regulatory region 676843 | 1965 bp proximal | ||||||
Tssr84449 | transcription start site region 84449 | 1766 bp downstream | ||||||
Tssr84450 | transcription start site region 84450 | 1177 bp downstream | ||||||
Tssr84451 | transcription start site region 84451 | 568 bp upstream | ||||||
Tssr84452 | transcription start site region 84452 | 596 bp upstream | ||||||
Tssr84453 | transcription start site region 84453 | 1337 bp upstream | ||||||
Tssr88934 | transcription start site region 88934 | 1703 bp upstream | ||||||
Tssr88935 | transcription start site region 88935 | 1652 bp upstream | ||||||
Tssr88936 | transcription start site region 88936 | 1631 bp upstream | ||||||
Tssr88937 | transcription start site region 88937 | 1567 bp upstream | ||||||
Tssr88938 | transcription start site region 88938 | 1310 bp upstream | ||||||
Tssr88939 | transcription start site region 88939 | 1275 bp upstream | ||||||
Tssr88940 | transcription start site region 88940 | 1243 bp upstream | ||||||
Tssr88941 | transcription start site region 88941 | 954 bp upstream | ||||||
Tssr88942 | transcription start site region 88942 | 939 bp upstream | ||||||
Tssr88943 | transcription start site region 88943 | 911 bp upstream | ||||||
Tssr88944 | transcription start site region 88944 | 863 bp upstream | ||||||
Tssr88945 | transcription start site region 88945 | 846 bp upstream | ||||||
Tssr88946 | transcription start site region 88946 | 750 bp upstream | ||||||
Tssr88947 | transcription start site region 88947 | 721 bp upstream | ||||||
Tssr88948 | transcription start site region 88948 | 691 bp upstream | ||||||
Tssr88949 | transcription start site region 88949 | 385 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 07/22/2025 MGI 6.24 |
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