rs36739453 SNP Detail

Summary

• ID
  rs36739453
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:134805889 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCAA GATGGGAAAG AACCGACATA
  M
  ACACAACTAG AATACAAATG TAACC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J
ss51438871	NES14009639	PERLEGEN	MM_PANEL2	f	SNP	C			C	C	A	C	C	C		C	C
ss133787580	ENSMUSSNP2028700	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C
ss321982530	CHEV_6_134778944	CHEVERUD	SCREENING_POP	f	SNP										C			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J
rs36739453					SNP	C	C	C	C	C	A	C	C	C	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51438871	NES14009639	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:134805889 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18077	CpG island 18077	1003 bp proximal
Crebl2	cAMP responsive element binding protein-like 2	1228 bp upstream
Gm67917	predicted gene, 67917	15 bp downstream
Rr368197	regulatory region 368197	959 bp upstream
Rr639726	regulatory region 639726	184 bp distal
Rr639727	regulatory region 639727	400 bp distal
Rr639728	regulatory region 639728	120 bp proximal
Rr639729	regulatory region 639729	1159 bp proximal
Rr639730	regulatory region 639730	1340 bp proximal
Rr639731	regulatory region 639731	1535 bp proximal
Tssr59250	transcription start site region 59250	1219 bp upstream
Tssr59251	transcription start site region 59251	1290 bp upstream
Tssr59252	transcription start site region 59252	1393 bp upstream
Tssr59253	transcription start site region 59253	1838 bp upstream