rs36741547 SNP Detail

Summary

• ID
  rs36741547
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:126167326 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCAGACCC ACAGGACTAA
  AGCTTGCTCA TCTTTTGGGA GTTCAAACTC AAAAATGCTG ATACTTTCTC TCCCTTCTCC
  ATCCTGCACT CTTCTTTCCA GTTTCTTGCT GTTTTTTTTC CCTCTCTCTT CAATCGTGTG
  TGTGTGTGTG TGTGTGTGTG TGTGTTCATG TGTATATGTG CTCCCGTGAG TGGGAACAGG
  Y
  GCATGTAGAC CACAGGGTAT GTAGAGGTCT GAGAGGTCTG GTTGGTGCCA GTTCTTATTT
  TCCACCTTGA GACAGAATCT CTTTCCCTTT GTTCCCCACC ATGAATGCCA GGCTAAGTGA
  TCAGTGAGCT TCTGGAGATT TCCCTGGTCT CTACTCGAGT CTACCCCACT TGAACAAACT
  GACATTACAG ATGTGTGCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ
ss51820869	NES14712609	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ
rs36741547					SNP	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51820869	NES14712609	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:126167326 () rs orientation: forward

Symbol	Name	Function Class
D5Mit214	DNA segment, Chr 5, Massachusetts Institute of Technology 214	within coordinates