rs36741804 SNP Detail

Summary

• ID
  rs36741804
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:71058955 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGTTAGGA CTGTAAGGAG
  CTTCTTCAAA CACAAGGCAA AGTACCCACA GCACACAAAG GGCCCACGGA GTGGGGCAGA
  TGTGGGGCGA GGAAAGCTGT GGAGGCAGCC AGAAGACAGA ATGATCAGAG CAGACACTGC
  TGGAGTGGAA AACAAAGAAG CCTTTGTTTG TAAAAGTTGT AGAGGAGGCA CGCTAGGCTA
  Y
  GACACAAGGT TCAGTAGAGA TCTCAAGAGC CAGAGAAAGC TATGTAGATT CTTGTCAACA
  TTGTTGCTTT TAAAACCGTT AGTTTTCAAA GTATTAGCAA CTTTGAAACG TATGTGTGAA
  ACAGCAAATG AGACACAATG TCTTTATCTT TTTCCTTTCT CTTCTAATTT ATAGGGGCTG
  TTTGTTTCTT TCTTTGTTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50734958	NES14244219	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	T	C	C	C	C	C	C	C	C	C	C
ss136612568	ENSMUSSNP1307370	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36741804					SNP	T	T	C	C	C	T	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50734958	NES14244219	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:71058955 () rs orientation: forward

Symbol	Name	Function Class
Aqp9	aquaporin 9	within coordinates
Gm32714	predicted gene, 32714	within coordinates
Rr682494	regulatory region 682494	1192 bp distal