rs36742198 SNP Detail

Summary

• ID
  rs36742198
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:24023096 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTGGAGT CTGAGGGCAT
  ACGGTACACA GACATACCTG CAAATAAAAT ACCCATACAC GTAAAATTAA AACTAAATTA
  ATGAACAGAT GGATGAGTGA AAAGAAGATA CATACTTATT TACCTTTGTT CATATTCTGT
  TATGCACTGA AATGGCTGTA TGCATAGAAA ACTATTTTAT TCCTGATATA ATGCAGTACA
  Y
  CCATAAAACA AATTCAAATC AGAAACCTAC TTTCTCTTCT ACATAACTGG CATCTTAACA
  TCAGTTTCAA GAGATGCCAT TGATACAAAG TTTAAGAGCC CTGACTTGGT GAGGCAGAAA
  CGTAACCTCT GGCCTTACAG CCAATGAGCA GAGCATGGCT TCATCCATCT GATCTTTGTG
  TCTCTGTATG TGGTTGACTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50930087	NES13480097	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36742198					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50930087	NES13480097	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:24023096 () rs orientation: forward

Symbol	Name	Function Class
Gm53062	predicted gene 53062	within coordinates
Rr36322	regulatory region 36322	448 bp distal
Rr395981	regulatory region 395981	584 bp downstream