rs36742777 SNP Detail

Summary

• ID
  rs36742777
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:18001494 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TATAAAGAAA GAAGGAAAGT AGGGAAAAAT AAAAACACGT
  AAAATCACAA CAAAATGCAC TACCACTAAA GATTATGTTC CGTTATGATT GCTTTCTTTC
  W
  TTTTAAATGT CCAATAGAAA AGAATTATGG GTAAATATTA CATCAGGTGC CTGGATACTT
  TATTTTCATT CATCCATGTT TTCTTTCTTC TGTACTCAAC                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	PWD/PhJ	WSB/EiJ
ss51687575	NES14753946	PERLEGEN	MM_PANEL2	f	SNP	A	A	T	A	T	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	PWD/PhJ	WSB/EiJ
rs36742777					SNP	A	A	T	A	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51687575	NES14753946	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:18001494 () rs orientation: forward

Symbol	Name	Function Class
Cd36	CD36 molecule	within coordinates
Tssr50146	transcription start site region 50146	1021 bp upstream
Tssr50147	transcription start site region 50147	914 bp upstream
Tssr50148	transcription start site region 50148	888 bp upstream
Tssr50149	transcription start site region 50149	840 bp upstream
Tssr50150	transcription start site region 50150	814 bp upstream
Tssr50151	transcription start site region 50151	795 bp upstream
Tssr50152	transcription start site region 50152	491 bp downstream
Tssr50153	transcription start site region 50153	518 bp downstream
Tssr50154	transcription start site region 50154	575 bp downstream