rs36743277 SNP Detail

Summary

• ID
  rs36743277
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:66211129 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATGTCCAG TCTATTCTGT
  TACAGAATAC AAACCCATGC TGAGCCATTT TCGGAACAAA GCAGCAAACT AGTTACAGAC
  ATTACAGGCA CGTTTACCTT TGACACTGAC AAGAGAATGC TCAGGTGAGT AGCTGTGAGA
  GCCGGCTGAC ACTACAGGCT GACGACGCAT GGACTGACAG ACAGACGCGT CTAACGCTCT
  R
  TGCCCACACT GACTGATGGC AGCCATCTCC CACCATGATG GAGGAGGGCT CCTAAGACAG
  AGAGATGCTC CGCTTGATGT TCAGCTTCTA CTGCTATGCA AATCGCTTCA TTTTTAAGTA
  GATAGGTGAG AAAGACACTC TGCTTTCTGG TTGTTGTGGT TAATATTAGA ACAGAGCGTG
  GAAAGTTGTC CTAAAAAGTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss51731009	NES14743134	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs36743277					SNP	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51731009	NES14743134	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:66211129 () rs orientation: forward

Symbol	Name	Function Class
Rbm47	RNA binding motif protein 47	within coordinates
Rr113965	regulatory region 113965	1472 bp proximal
Rr125273	regulatory region 125273	1328 bp distal
Rr125274	regulatory region 125274	within coordinates
Rr129750	regulatory region 129750	1872 bp proximal
Tssr46522	transcription start site region 46522	650 bp downstream
Tssr46523	transcription start site region 46523	637 bp downstream
Tssr51169	transcription start site region 51169	1011 bp upstream
Tssr51170	transcription start site region 51170	713 bp downstream