rs36743278 SNP Detail

Summary

• ID
  rs36743278
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:183966396 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTTTGGCC TGTTCTTCAA
  ATCTTGCTCC TATTCCATCG TGCTCCATTG TCTGCTGGGC TTGCCATCCA CGGTTCTAAT
  GCCTCACTTC AAAGCCTTTC CTAACTTCCA GAAAGAGTAG GGCTATTGTT CTTCACATTG
  TCATAAGCAT CTATTAATAG TACCCAGGGC TGGGAGTGTA GTTCAGTGGT AGATCACTGG
  Y
  CTAGCAAATG TGAGGACTGG GTTTGGTCCT CAACACTTTA GGCAGAACAG AACAGATCAG
  AACAAACAAA CAAACAAACA AAATAAAGCT TGCCTTTTAC TTCTCCCTTC TCTTTAAAAT
  CTGTATTTAT TTTGTTCAAA TGTATACTGG AAGAGTTGTG GTTTCCTAAG CTCCGGGGAT
  AGAGAGAGAA ACTTATTAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51415202	NES14449112	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36743278					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51415202	NES14449112	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:183966396 () rs orientation: forward

Symbol	Name	Function Class
Rr425189	regulatory region 425189	1066 bp proximal
Rr425190	regulatory region 425190	1589 bp proximal