rs36743817 SNP Detail

Summary

• ID
  rs36743817
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:75416117 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGGTTCTA CGGTGGCAGT
  TTGCAGTGGT CTCTGATGAC ATTTCGTTAG CAGTCCCTGT CTGGCAGGAG TGTTTTAAAC
  TTCGTCTCCT TTGTATGTTG TACCTTGCAA CAGTCAGGAC TGTTAGATTA AAAAGGATCC
  CAGTGTTTTA ACCTGATTGA TACTTCTACC TCAGAACCGT TTGGAGAAGG GTGGCCCGCG
  Y
  GTGTGTTTAA ACTAGAACAG GAAGGGGACC TGTGCAGGGC CTCAGAGATG CGCATGCTCA
  GGCCGCTCAA ATGTAGAACC CTGTACTGTA TCGACCTGGG GGGCGGAGGG GGGGGGCGGA
  GTGGTAAGAA GGAAAATGTT AGTGTGTATT CTGGCTGTGC ACGTCCAACT CTTTTTTTTT
  AGAATGTTTC ATCTGAACTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51533152	NES14628187	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36743817					SNP	C	C	C	C	C	C	T	C	C	C	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51533152	NES14628187	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:75416117 () rs orientation: forward

Symbol	Name	Function Class
Lcp1	lymphocyte cytosolic protein 1	within coordinates
Rr369874	regulatory region 369874	within coordinates
Rr404213	regulatory region 404213	1695 bp downstream
Rr404214	regulatory region 404214	1014 bp upstream
Rr404215	regulatory region 404215	1966 bp upstream
Tssr4479	transcription start site region 4479	1056 bp downstream
Tssr126625	transcription start site region 126625	1880 bp downstream
Tssr126626	transcription start site region 126626	1855 bp downstream
Tssr126627	transcription start site region 126627	1773 bp downstream
Tssr126628	transcription start site region 126628	1523 bp downstream
Tssr126629	transcription start site region 126629	832 bp downstream
Tssr126630	transcription start site region 126630	811 bp downstream
Tssr126631	transcription start site region 126631	901 bp upstream
Tssr126632	transcription start site region 126632	1126 bp upstream
Tssr126633	transcription start site region 126633	1548 bp upstream
Tssr129770	transcription start site region 129770	1995 bp upstream
Tssr129771	transcription start site region 129771	241 bp upstream
Tssr129772	transcription start site region 129772	580 bp downstream