rs36743831 SNP Detail

Summary

• ID
  rs36743831
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:10612691 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGATGAGG GAGTGGTGAT
  CGTGTGTGCG TGATGCTTAT AGCAAGGGTA CACGTTGTCA GCGGGTGGCC TGGCCCACGG
  CCACATCTTC CCAGGGGCGC TCAGAGGGGC TGCCCTGGAG GAAGAGCTTA CCGCCCAGCA
  CGTGGGTTCT GCGATCTCTT GCAGTTCCTG CAGATCTCCC ACCACCTGTC TCCCTGGCAT
  Y
  ACTGTGCCAC ACACGAAAAG CTCCTTGGGG CTTTCTGGTG GGCACCCTAC CCTTGCCTAT
  CTGAAGTGGA ACTCCACCAG CTTCCACAGG CACCCTACCA TTTACCACTT CGATGGCACC
  TCACGCCCCT TTCAGAGCCC CCTTTGGCTT AGCTATTAAG TTGTTCTGTA GATCCCAGCT
  GCCGGATTCT CTGCCTCAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50601048	NES13642638	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36743831					SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50601048	NES13642638	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:10612691 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10616	CpG island 10616	634 bp distal
Cpgi10617	CpG island 10617	within coordinates
Rr362969	regulatory region 362969	within coordinates
Tssr155079	transcription start site region 155079	1082 bp downstream
Tssr155080	transcription start site region 155080	1015 bp downstream
Tssr155081	transcription start site region 155081	1003 bp downstream
Vwce	von Willebrand factor C and EGF domains	within coordinates