rs36743864 SNP Detail

Summary

• ID
  rs36743864
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:129206255 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAGGCAGG CATGTGATTC
  TGATTTTGCA GAGAAACAGC ACACCATTCT TGAATCAAAG AGGGGGTAAA CAAGGACTTC
  AAAGGAAAAC ATGCAAGGCC AGTGTGAGGC AGGGCTCGAA TCTGGGGTTT ACAGAGGCAA
  AAATGACAGT TTAAATTCCA GAGATGCAAT TGCTTTAAAT AACTTTGAAT CTCTAAAGGG
  R
  TTTTCTCAGG GTAACAACTG TAGGTTACAC CAGCGTCTGG AAATCACATT CATTTCCATT
  TAAGGGTATG CTGACATCCT TTAGAATATA CACTTCTCAT TGAGGGTAGC TCAGCTGTTC
  TTGTTTGCTG GCCCCATGAT CTGAAGCTGG AGAAAGAGAG AGAGAGAGAG GAGAAAGAGA
  GAGAGAGAGA GAGAGAGAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss51418739	NES13704010	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs36743864					SNP	G	G	G	G	G	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51418739	NES13704010	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:129206255 () rs orientation: forward

Symbol	Name	Function Class
Gm38906	predicted gene, 38906	1529 bp downstream
Gm47861	predicted gene, 47861	within coordinates
Rr399972	regulatory region 399972	35 bp upstream
Tssr59119	transcription start site region 59119	84 bp upstream
Tssr59120	transcription start site region 59120	103 bp upstream
Tssr59121	transcription start site region 59121	1210 bp upstream
Tssr59122	transcription start site region 59122	1244 bp upstream
Tssr59123	transcription start site region 59123	1303 bp upstream
Tssr63549	transcription start site region 63549	173 bp upstream
Tssr63550	transcription start site region 63550	47 bp upstream
Tssr63551	transcription start site region 63551	970 bp downstream