rs36744167 SNP Detail

Summary

• ID
  rs36744167
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:59034932 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGAGCATC GCCGAAGAGC
  TGATCACCAA CACCAACTAG GTGTTCAGAT ACATGAGACC ATATCGCACA TTTTTCATCC
  AAACTAGCAT AGTGTCTTAA AAGTGGTTTG TAATTGAATT TGTAATAAAC TGGGGTCTAT
  GTCAGTTGGT TTTCTTCATC TATATGACTA TATAGATTGG AAGTTACTGT AAAATGATTG
  Y
  CTTCAGTCTA AATAGGCAGT TAGAAGCAAT TCTGTTCATG TTTGTTGGCT ATACCTCTGC
  CTCAAGTATG AACGTTAGAG TTTCTCTATC GACACAGCCG CCAAGACCTG CGGAGGTGGG
  AAGTGGAGGT GAGAGAAATT AGAGTGGGCC ATAGAGGAAG GAGACAACAG GTCCACTGGA
  GCACTGAGCA GCTGCCATAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51261662	NES14277537	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36744167					SNP	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51261662	NES14277537	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:59034932 () rs orientation: forward

Symbol	Name	Function Class
C2cd6	C2 calcium dependent domain containing 6	1343 bp downstream
Gm55816	predicted gene, 55816	1350 bp downstream
Rr411548	regulatory region 411548	1808 bp distal
Stradb	STE20-related kinase adaptor beta	651 bp downstream