rs3674427 SNP Detail

Summary

• ID
  rs3674427
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:180846945 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGGTAGGAA AGGGAAATGG ACTTGGGTCC CTGAGCAAAG
  CCCCCATCAC CCTGCCCCCT AAGATTGATG CCCCTAAGTA CCCTGAAGTG TTGAGTGATC
  Y
  GAGGCCCAAC TCCTCAAGGT GTTACCCTTA AAAAGTGGTC CATGGGGGCT TTGCCCCAGA
  GAGGATCTGG TTGCCAACAC CCTCCCTTTG GCTGACTAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss5050412	WI_WGS_2_179537220	WI	MOUSE	f	SNP							C	T
ss37832333	NES08676093	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	T	T	C		T	C	T	C	C	T	T	C	T
ss45230858	mCV22913161	ABI	CRAMUS_MOUSE	f	SNP	T	T	C					T		C
ss148398704	ENSMUSSNP3684390	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs3674427					SNP	T	T	C	C	T	T	C	T	T	C	T	C	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37832333	NES08676093	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:180846945 () rs orientation: forward

Symbol	Name	Function Class
Gm40033	predicted gene, 40033	1196 bp upstream
Gm74821	predicted gene, 74821	373 bp downstream
Ptk6	PTK6 protein tyrosine kinase 6	1537 bp upstream
Srms	src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites	411 bp downstream