rs36744444 SNP Detail

Summary

• ID
  rs36744444
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:122806827 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCTCCTAT CCCATTACAA
  CAGCACTGCT GGGAGCTGGA GATCAGCCCC CCTGAAGAAA GAGCATACAG CTTTTGTGAT
  GTCACTGTCC TTGCCACTCC TTTCTGTCTT TATATGTCAC TGGCATGCTT TATGCCCAGC
  CCCTCTGGAG ACCCTTGACT CAACCTGCAA GCTGGCTGAG GCTTTCTGCC TCCTCGGGGT
  Y
  GGTGAACTCT CATCCTGGGC TCAGGAAGAG GCTCTTAGTT CAGATATCTT TTTGATCATC
  CTTGCAGAAC AATGTGATGT GCTGAATAGG CTATGGCCAG AATGAATGGT CCCCTGGCTG
  TCCTGGGCAT TTTAATTTAT CAAGCAGACA GAGCATGCAA GGACAGTGTA CCAAGCAGAC
  ATTAGCTGTC ATCTGCCGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51196348	NES13816705	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36744444					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51196348	NES13816705	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:122806827 () rs orientation: forward

Symbol	Name	Function Class
Gm71511	predicted gene, 71511	866 bp downstream
P2rx7	purinergic receptor P2X, ligand-gated ion channel, 7	within coordinates