rs36744985 SNP Detail

Summary

• ID
  rs36744985
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:128072138 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCATGTAAT CCCAATATTT
  GGGAGGCAGG TCATCCTTGG CTACACAGCA AGTCAGATGT CAGCCTGGGC TATGTGAGAC
  CCTATCTCAA AAACTAAGAA CAAATAACAA CAACAAAGAG CCCTGAAACA GTCACACGGC
  ACAGTCTATG TTATACACCT TTTACCACGT TAAAAATGAA CAGACATCTA AAACCTAGGA
  R
  ATTCTAGGCA GAGACCCCTG TTATCAAGCA ACGGCAAGGC TTGCCAGCCC TGCTTAGAGG
  ATGAGAAGTC AGAGGCAGAG AAGCCAAACT CCCAGCGCAG CATCCAGCCT GGCTGGCATT
  CACGCACATT TGCCATGCCC GTGCACGTGC TTTGCCAAAG CTTACCGAAT CAGAGTGTTT
  CCTCCTGAAA TATGTACAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51863757	NES14893024	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36744985					SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51863757	NES14893024	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:128072138 () rs orientation: forward

Symbol	Name	Function Class
Gm55163	predicted gene, 55163	149 bp upstream
Rr639181	regulatory region 639181	7 bp proximal
Rr639182	regulatory region 639182	215 bp proximal
Tspan9	tetraspanin 9	within coordinates