rs36746447 SNP Detail

Summary

• ID
  rs36746447
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:10838101 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGCACAAA TGATAAAATA
  GCTACTACAG TAACAAGACT GGTGTATGCC TCTTGTTCTT TAAACTCTGT TCTGAATACT
  CTTTCTGGGT GCTGAGTCTT TCTGCTCAGG TCAGTGATGC CCGGCTCCTA GTCCAGACTA
  ATGAAATGTG CCAGTCTATC AGTTGACTGC TGCTGTTTCT GTATACCTCT GGAGTGGGAC
  R
  GTGACAAGGC AGTGGGGTAA CAACTCAGTT TCTACAGGGC CTAAGAGCTA CATTCCTCAC
  AGTACACTTC ATCCTTGCTC TCGGGTTCAG ATGAGCCTCC CCACTACCCA GTGTGATGGA
  TTTCTATGGA GCTTGGAGCC ATTCAAGGCT TTGAATAGTG AACACTTTCA GGGGGAGAGG
  GAGTATGGAG GTTGCCAGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50599522	NES13639171	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36746447					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50599522	NES13639171	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:10838101 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10623	CpG island 10623	1548 bp distal
Cpgi10624	CpG island 10624	295 bp distal
Tmem132a	transmembrane protein 132A	within coordinates
Tssr155140	transcription start site region 155140	942 bp downstream
Tssr155141	transcription start site region 155141	904 bp downstream
Tssr155142	transcription start site region 155142	839 bp downstream