rs36747969 SNP Detail

Summary

• ID
  rs36747969
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:128176579 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAAGGGTTCA TACATACATA TATATGTCAT AACACCAAAA
  CACATAAATA ATTTTTTTTA AAAAACCAAT GAGTTTTTGT GGATAAGTTA CCTGGATGCC
  S
  AAGAAATGAA ATCTTTTAAT AAGCTCTCCT GGCCGATGGC TAGTCACCTT GTTTGGCTGT
  ACATCCTCTA AGGATTAAGT AGTCCTGTTG TGGTACTGAA                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51863571	NES14892186	PERLEGEN	MM_PANEL2	f	SNP	C	G	C	G	G	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs36747969					SNP	C	G	C	G	G	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51863571	NES14892186	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:128176579 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18048	CpG island 18048	419 bp proximal
Gm10010	predicted gene 10010	within coordinates
Gm66766	predicted gene, 66766	688 bp upstream
Rr399953	regulatory region 399953	891 bp upstream
Rr639207	regulatory region 639207	305 bp proximal
Rr639208	regulatory region 639208	699 bp proximal
Rr639209	regulatory region 639209	956 bp proximal
Rr639210	regulatory region 639210	1103 bp proximal
Rr639211	regulatory region 639211	1880 bp proximal
Tssr63410	transcription start site region 63410	936 bp downstream
Tssr63411	transcription start site region 63411	958 bp downstream
Tssr63412	transcription start site region 63412	960 bp downstream
Tssr63413	transcription start site region 63413	982 bp downstream
Tssr63414	transcription start site region 63414	1022 bp downstream