rs3674857 SNP Detail

Summary

• ID
  rs3674857
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135764359 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GGGACAGAG GTCAGTGGGG GAACATGAGG
  GATTTGTTCC TGACATCTCT CCTTAGTCTT TTGCTTGTGT CCACCCTGAG TGGTTACCAG
  GAAATCCATG GCCCTTTCAA GAGAGGATAA CACCTACCTC CACATTCAGA GTGGGTGTTT
  Y
  CAGGACAGAC TCTAACATGA GTGCTGTGGA GTGGAGAGTG CTTGCATTCT TGACGGGAAG
  TGAGTTGGAG GTCCCGATCT GCCCCTGAAG ATGCTTTGTG GTTTCAAAGT CTTGACTAGA
  TTGCTTTCCC TCCCAAGATC TTACATTATT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss5050845	WI_WGS_1_136701349	WI	MOUSE	f	SNP	T							C
ss49683428	NES12973100	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	C	C	C		T	T	C	T		T	C	T	C		C
ss145547982	ENSMUSSNP869720	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C							T
ss319993828	CHEV_1_137733198	CHEVERUD	SCREENING_POP	f	SNP													T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs3674857					SNP	T	T	C	T	C	C	C	C	T	T	C	T	T	T	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49683428	NES12973100	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135764359 () rs orientation: forward

Symbol	Name	Function Class
Rr419292	regulatory region 419292	1758 bp distal
Rr419294	regulatory region 419294	198 bp distal
Rr419295	regulatory region 419295	within coordinates
Rr419296	regulatory region 419296	271 bp proximal
Rr419297	regulatory region 419297	1128 bp proximal
Tnnt2	troponin T2, cardiac	within coordinates
Tssr9005	transcription start site region 9005	225 bp downstream
Tssr9006	transcription start site region 9006	1789 bp upstream