rs3674985 SNP Detail

Summary

• ID
  rs3674985
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:180847026 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTGAAGTGT TGAGTGATCT GAGGCCCAAC TCCTCAAGGT
  GTTACCCTTA AAAAGTGGTC CATGGGGGCT TTGCCCCAGA GAGGATCTGG TTGCCAACAC
  Y
  CTCCCTTTGG CTGACTAGAT ACCCTATATC TGCCTAATCC CACCAACCAG AAAAGTCTGC
  CTTCTAACCA CTGCCTATCA CCCAAAGAGA TATTCTCAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	DBA/2J
ss5050975	WI_WGS_2_179537301	WI	MOUSE	f	SNP				T	C
ss45287160	mCV22913171	ABI	CRAMUS_MOUSE	f	SNP	C	C	T		C	T
ss148398709	ENSMUSSNP2706368	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	DBA/2J
rs3674985					SNP	C	C	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:180847026 () rs orientation: forward

Symbol	Name	Function Class
Gm40033	predicted gene, 40033	1115 bp upstream
Gm74821	predicted gene, 74821	454 bp downstream
Ptk6	PTK6 protein tyrosine kinase 6	1618 bp upstream
Srms	src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites	330 bp downstream