rs3675071 SNP Detail

Summary

• ID
  rs3675071
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:181301548 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATCCAGGGAT CTGCACTTCA GTAAGGGTGG GGCTTGTACT
  TCACAGTGTC AATGGCTGTA TCTCCCTCAT ACAGCAGGGG GCGTGGGTGA GACGTTGGCC
  S
  GGTCCTCGAG TAGTGTGGGA GGCAACAAAG CCTCCTGCCC CCACCCGACA ACCTGGTTAG
  GGATTTTAAA ACGTCATGCA TCCGTCCTGC CCAACTCTG                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss5051062	WI_WGS_2_179991811	WI	MOUSE	f	SNP							G	C
ss37850475	NES08683652	PERLEGEN	MM_PANEL2	f	SNP	C		G	G	C	C			C	G	C	C	C	C	C	C	G
ss45307890	mCV22775652	ABI	CRAMUS_MOUSE	f	SNP		C	G					C		G
ss148402974	ENSMUSSNP5283132	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	G							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs3675071					SNP	C	C	G	G	C	C	G	C	C	G	C	C	C	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37850475	NES08683652	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:181301548 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12934	CpG island 12934	within coordinates
Gm29797	predicted gene, 29797	288 bp downstream
Gm74533	predicted gene, 74533	382 bp upstream
Rr573063	regulatory region 573063	within coordinates
Rr573064	regulatory region 573064	330 bp distal
Rr573065	regulatory region 573065	13 bp distal