rs36753629 SNP Detail

Summary

• ID
  rs36753629
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:114339019 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATGATTAT AGTTTTGGAA
  TGTTAGGCAG GTGGCAACCA GGTGGTTAAT ACTCAAACTT AAGAAACTTC ACTTCCAATG
  GGAATCTCCT GGTACCCACC CTCACCAGCT CCTGCCAGCT CCTGCCAGTT CCTGCCAGCC
  CCTGCCACCT GACCAGGGAC CGCTACCCGT CAGTCGCTCA CCGCAGTGAC AGAAGGTTTC
  Y
  GGCCAGCCAG CACCCACGGT GTCTCCTTCC TGAATCTCTT TCCTGTCGTA CCTCAGAACT
  GGCTGCAGGT GCTCACCAAA CATGGCTGGT GTCATGATAT GGATCAGTCC ATATCAAGGT
  ACACTCTCCA AAGTGCTTAG CACCAATTCC CCCACCGGCT AGGAGTCCAA TCTCAGGCGG
  CCACAATAAG CCACTTGTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52042479	NES15055433	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36753629					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52042479	NES15055433	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:114339019 () rs orientation: forward

Symbol	Name	Function Class
Rr198888	regulatory region 198888	within coordinates
Rr207539	regulatory region 207539	219 bp distal
Rr207540	regulatory region 207540	1182 bp proximal
Rr368881	regulatory region 368881	27 bp upstream
Trim71	tripartite motif-containing 71	1317 bp downstream