rs36754376 SNP Detail

Summary

• ID
  rs36754376
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:62320912 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCCC TGGGAGCAGA CGAAGGCGTC
  W
  GTGGACTGAG GATCATGAGT GTGAG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	LG/J	SM/J	WSB/EiJ
ss50718955	NES14253123	PERLEGEN	MM_PANEL2	f	SNP	T			A	A	T	A				T
ss136549560	ENSMUSSNP342015	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T					T
ss322982303	CHEV_9_62261437	CHEVERUD	SCREENING_POP	f	SNP									T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	LG/J	SM/J	WSB/EiJ
rs36754376					SNP	T	T	T	A	A	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50718955	NES14253123	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:62320912 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21896	CpG island 21896	1817 bp proximal
Gm40523	predicted gene, 40523	707 bp downstream
Rr1154	regulatory region 1154	1019 bp upstream
Rr196313	regulatory region 196313	112 bp distal
Rr196314	regulatory region 196314	289 bp proximal
Rr201157	regulatory region 201157	1111 bp distal