rs36754406 SNP Detail

Summary

• ID
  rs36754406
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:9962690 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGCTTCCA GTTGCTTCAC
  CGCCAGTTAT ACTAATCACA CTGAAACACC TAAAAGAATA TTCACGTTTA TTAAACTCCT
  TAGTTTGGGA AAGATCGTAA AATACAGGTG TTTTCAGGCA GGACTATTAA GTACTCTTGG
  TTCTGAGTTA CATGCTAGAC TGTCGTGGGA ACACACTCCT GGGTGTCGCT GCTTGTGTGC
  Y
  TTTGACTGGG TCAGTGCCCT GCTGGGCATC CTTGCAAGTC AGGGCCAGGC TGTGAGGCAT
  CACTCATAGA GAACAGGTTT GGTGCCAGCT TCATCCCTGT GGGAGAGTAT TCATAGCATG
  AGTTGACTGA GGACAAAGGT GGAAGCAGGT TTAAAACACA CTGGGATGGT CTGTAAATGT
  TAATGTCTAG TACTAGAAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50605188	NES13645680	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36754406					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50605188	NES13645680	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:9962690 () rs orientation: forward

Symbol	Name	Function Class
Best1	bestrophin 1	mRNA-UTR
Cpgi10595	CpG island 10595	1941 bp distal
Fth1	ferritin heavy polypeptide 1	228 bp downstream
Rr543966	regulatory region 543966	1324 bp distal
Rr543967	regulatory region 543967	744 bp distal
Rr543968	regulatory region 543968	1971 bp proximal
Tssr155006	transcription start site region 155006	1107 bp downstream
Tssr155007	transcription start site region 155007	1034 bp downstream
Tssr155008	transcription start site region 155008	743 bp downstream
Tssr155009	transcription start site region 155009	397 bp downstream
Tssr155010	transcription start site region 155010	209 bp downstream
Tssr158137	transcription start site region 158137	1089 bp upstream
Tssr158138	transcription start site region 158138	1000 bp upstream
Tssr158139	transcription start site region 158139	707 bp upstream
Tssr158140	transcription start site region 158140	486 bp upstream
Tssr158141	transcription start site region 158141	458 bp upstream
Tssr158142	transcription start site region 158142	433 bp upstream
Tssr158143	transcription start site region 158143	367 bp upstream
Tssr158144	transcription start site region 158144	229 bp upstream