rs36756242 SNP Detail

Summary

• ID
  rs36756242
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:127386612 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGAGGACAA GCAGTGTTCC
  CACCACTACC ACCCCTGCCA GGCCAGCACC AGACAACTCT TCTCCCAGTG TGAGACTCAG
  GGGAAATCCC AGTTCCGTGG GGCTCCTGGT TTCTATGTCT GGTTGCCAAA GGGAGGGGCA
  CTAATGTCTC TTTATCTCTA AAATATCTTC ATTCCAGCCT GAATGGCTAC ATTACTTGGT
  R
  GAAATGACCT GGGTCTTTCT GAACACGAGA GAGCAAGGAA CCTCAGCATT TGCCACCCTA
  CCTCACACCC ACCAGGCACG AGACACCCAT GTCCCCTTGT CACTTGGTGT GTTTAAGACT
  TGGCTTCTGC GTGTGGGCAT AGAGAGCCAG GATTGGACCC TGCCTGGTGA CTGCCACTCA
  CAGCACACTG TCCCCTGTAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51358142	NES14484412	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs36756242					SNP	G	G	G	G	G	A	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51358142	NES14484412	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:127386612 () rs orientation: forward

Symbol	Name	Function Class
Gm41947	predicted gene, 41947	within coordinates
Mgat5	mannoside acetylglucosaminyltransferase 5	within coordinates
Rr11973	regulatory region 11973	within coordinates
Rr19047	regulatory region 19047	1612 bp distal
Rr30263	regulatory region 30263	within coordinates
Rr396245	regulatory region 396245	142 bp upstream