rs36756589 SNP Detail

Summary

• ID
  rs36756589
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:20369070 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCAGGGGAG GAAAATCAGA
  ACTTCTTTTG TGAGAGAAGG GAAGGCTCTC CTGAAAGCTC CCAGGCCTCG TGGATATTCT
  CCCACTGGAA GACTGGCCGT GGGGAGGGAG TGTGAGCACG TGTGAACTCC TGGGGAATTT
  CTCCTTCCTC ATGATATCCT GGTTGCTATA GTGCAGATCT ATTTGTAACA CACAGAAAAT
  R
  CTTTAAATAA AAGCTACTTC CTGACCATGA CTTCCTGGGC AATGTGTTCT TCCGGAGACT
  GTTGAACGCC AAAGTTTACA AGCAGTCTGA GCGCGAACCC TGCCCATTCA GGTCGGAGCA
  CCATTGGGAG CAGGGTTCCA TCCTGTGGTC AGGGGGTTGC TGTGCTCCTG AAAAAAAAAA
  AAAGAAAGAA AGAAAGAAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51076123	NES14368651	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36756589					SNP	A	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51076123	NES14368651	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:20369070 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5309	CpG island 5309	350 bp proximal
Elmo1	engulfment and cell motility 1	within coordinates
Rr270987	regulatory region 270987	670 bp distal
Rr270988	regulatory region 270988	within coordinates
Rr270989	regulatory region 270989	731 bp proximal
Rr281054	regulatory region 281054	within coordinates
Rr403595	regulatory region 403595	163 bp upstream
Tssr118580	transcription start site region 118580	40 bp upstream
Tssr118581	transcription start site region 118581	98 bp upstream
Tssr118582	transcription start site region 118582	387 bp upstream
Tssr118583	transcription start site region 118583	422 bp upstream
Tssr118584	transcription start site region 118584	503 bp upstream
Tssr118585	transcription start site region 118585	516 bp upstream