rs36757277 SNP Detail

Summary

• ID
  rs36757277
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:97466560 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGATGGCA GCTCACTTTC
  TGGCTGGTGA ATGTCCTTAG CTTTAACCAC CATTTCTTCC TGGAATGAGA TTTCAGCTAA
  GCTCTACCTT GTAACTAGTG CTATTACCTG GTGTGCCTTC TATTGGGTTG TCTGGCCATC
  TATTCTTAGC ATGATTATGA ATCTGTACTT AATGACATTG ATATGTTAAT GAAATACAGG
  R
  AGAAGTTTTA AGTGGTGATT GCTAGCCAAG GGATCACAAA AAATGACAAG TTTCTCTATT
  TTCAGATTTT ATACTTAAGT ATGTAATCCA TTTCCAGTTT ATTAGTGATG GCAGAGGCCT
  AAGGCTTTTC TCAAACTAGG GGCTAGTCAT TTCCATACCA TTTCAACTAG CACTTGTGTG
  CCCCAAATTG TTTCAGATGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	PWD/PhJ
ss50997906	NES13922362	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	PWD/PhJ
rs36757277					SNP	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50997906	NES13922362	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:97466560 () rs orientation: forward

Symbol	Name	Function Class
Chd1l	chromodomain helicase DNA binding protein 1-like	1498 bp downstream
Gm40102	predicted gene, 40102	within coordinates