rs36757658 SNP Detail

Summary

• ID
  rs36757658
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:57437380 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTGTTTTT AGATGATTTT
  TCAATACTGT TTAGTTTAAA GAATTCAAAA TTCCTGTATT GTATTAACAG TTAAGCAAGT
  AAGCTAACGC TCCAGGACTT TTCCTTTAAT CTCAGCACTG TTGCGTAATT GTGCTAATTC
  TTTGTGGTGT GTTCTTACTA GTTTGTTACA TAGATTCTCA TTTTACAGAT AACAGTGGCC
  Y
  GAACAGATGA GGTCACATGT CCATGATTCA GTGAGACTAG AGAGAACTGA GCCATGGACA
  GTAAGCAGAC AGATAACTAA ATTTGAGTGT ATGAAGAAGG ATATCTCAGG GTAATGTGAA
  CTTTTTTTTT TTTAACTTGA CAGGGATGAA TACACTTGTT GGCTATGATC TGGTTCCTGA
  GCCCAAAATC ATTGATGCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50712769	NES14261692	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C	T	C	C	C	T		C	C	C	C
ss136519679	ENSMUSSNP1988386	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C						C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36757658					SNP	C	C	C	C	C	C	C	T	C	C	C	T	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50712769	NES14261692	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:57437380 () rs orientation: forward

Symbol	Name	Function Class
Cox5a	cytochrome c oxidase subunit 5A	within coordinates
Gm26631	predicted gene, 26631	1190 bp downstream
Tssr85310	transcription start site region 85310	1142 bp downstream