rs36757892 SNP Detail

Summary

• ID
  rs36757892
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:38284318 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTTCTAAC TAATTATGCA
  TCCTTTCTCT TTCTCTAACT CCATATACTC AATCACATAC TCTGGGTAAA TCTGTTCTTT
  CCGGAAAATG ACAAAGACGG ACGGATTCAG CCTGGTGTCC ACACAGCTGT CATAGAGCGC
  GGGAGGGCTA CTTAATGTCA TATTTCCTTC AATGACACTT CCAACCAGGA CTCGGGCTAC
  R
  AACATGACAG TGCCTCTGGA ATCATATGAA CAACTCTTGT GTGAATACAT GGCTTCTTTT
  GTAAAATAAT TTCCTAGAAA TGATCAGAAA AAAAGTGGAG AATTACTATC AGCGAGCATA
  GGTTGTAACA GAATACAAAG AATCAGTCAC TGATATGAAT GAAAGAAACA TCTGCCAACA
  ACACCTGACT GACACCTATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51288667	NES13775836	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36757892					SNP	G	G	G	G	G	G	G	G	G	A	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51288667	NES13775836	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:38284318 () rs orientation: forward

Symbol	Name	Function Class
Gm53283	predicted gene, 53283	230 bp downstream
Tssr60393	transcription start site region 60393	1078 bp upstream
Tssr60394	transcription start site region 60394	691 bp upstream
Tssr60395	transcription start site region 60395	615 bp upstream
Tssr60396	transcription start site region 60396	72 bp upstream
Tssr60397	transcription start site region 60397	881 bp downstream
Zc3hav1	zinc finger CCCH type, antiviral 1	within coordinates