rs3675810 SNP Detail

Summary

• ID
  rs3675810
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:89815378 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTCCTAGCT GATCTTGAAT TCTCAAGAGA TCTGTCTGCC
  TACTAAGGCC TAGCTTGGCT TTCTAATAAA CATAGGATAT CTTGCTTGTT CATTCCTTCC
  Y
  TTTTTTTTTT GTAGCCAGTT GTGGTAACAC ATGCTTATCA TCCAAGGATT GAGAAAAGGC
  ATGGAAACCA CAAGTTCTCC CTCCCCTCCC CTCCCCTCC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss5051807	WI_WGS_7_79914446	WI	MOUSE	f	SNP	T	C
ss145293432	ENSMUSSNP2161729	ENSEMBL	ENSEMBL_Sanger	f	SNP			T
ss322314350	CHEV_7_97314680	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs3675810					SNP	T	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:89815378 () rs orientation: forward

Symbol	Name	Function Class
Picalm	phosphatidylinositol binding clathrin assembly protein	within coordinates
Tssr67723	transcription start site region 67723	622 bp downstream
Tssr67724	transcription start site region 67724	104 bp downstream
Tssr67725	transcription start site region 67725	62 bp downstream
Tssr67726	transcription start site region 67726	47 bp downstream
Tssr67727	transcription start site region 67727	4 bp upstream