rs36759020 SNP Detail

Summary

• ID
  rs36759020
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:92421558 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGAAGTCT TTATACAGAA
  AGATAACATG AACTTGCAAA TGCAGGCTTA TTCCTGTTTT CTCCTCTGAT CTTACCATTT
  CTGAGCATGC CAACCTAACT TCCTGTAGTC CAGAGTTACA CAATCATTAG CAGGTTGCTG
  TGTCTCTGAG CACAGCATGC TGGGAATGTG TGGAAAACAG GCAGAGTTTC ATGGCCCTTC
  Y
  GTCAAGGAAT GTTGGAGTTG AGAATAAAGA TAGTGCAGAT ATCTTGCACC TTGACTATGC
  TATCTATGAG GGGTAAATTA TGCATCTGGT CTGTGGACTA AAGGCCCTAT GTACTGGGTT
  ACATTACAAA ATGAATGGAC TTCTGGTTGT CTTTTTTGGA CTTTCTTCAA CCTCACCTAC
  TCAGTTTTTT CTGAACACTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J
ss52036461	NES15053636	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	C	C		T	T
ss323074129	CHEV_9_92434343	CHEVERUD	SCREENING_POP	f	SNP						T			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J
rs36759020					SNP	T	C	T	C	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52036461	NES15053636	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:92421558 () rs orientation: forward

Symbol	Name	Function Class
B430319G15Rik	RIKEN cDNA B430319G15 gene	within coordinates
Gm37545	predicted gene, 37545	431 bp downstream
Rr684631	regulatory region 684631	881 bp distal